Mchaourab Lab Publications
2022
Overway
E M ,
Bosma
K J ,
Claxton
D P ,
Oeser
J K ,
Singh
K ,
Breidenbach
L B ,
Mchaourab
H S ,
Davis
L K ,
O'Brien
R M ,
Nonsynonymous single-nucleotide polymorphisms in the G6PC2 gene affect protein expression, enzyme activity, and fasting blood glucose
J Biol Chem.
J Biol Chem.
2022 Feb
;
298
(2).
101534
- PMID: 34954144 [PubMed].
- PMCID: PMC8800118.
Del Alamo
D ,
Sala
D ,
Mchaourab
HS ,
Meiler
J ,
Sampling alternative conformational states of transporters and receptors with AlphaFold2
Elife.
2022 Mar
3;
11
(Online ahead of print).
e75751
- PMID: 35238773 [PubMed].
Claxton
DP ,
Overway
EM ,
Oeser
JK ,
O'Brien
RM ,
Mchaourab
HS ,
Biophysical and functional properties of purified glucose-6-phosphatase catalytic subunit 1
J Biol Chem.
2022 Jan
;
298
(1).
101520
- PMID: 34952005 [PubMed].
2021
Thaker
TM ,
Mishra
S ,
Zhou
W ,
Mohan
M ,
Tang
Q ,
Faraldo-Gomé
J ,
Mchaourab
HS ,
Tomasiak
TM ,
Asymmetric drug binding in an ATP-loaded inward-facing state of an ABC transporter
Nat Chem Biol.
2021 Dec
20;
(Online ahead of print).
- PMID: 34931066 [PubMed].
Schiemann
O ,
Heubach
CA ,
Abdullin
D ,
Ackermann
K ,
Azarkh
M ,
Bagryanskaya
EG ,
Drescher
M ,
Endeward
B ,
Freed
JH ,
Galazzo
L ,
Goldfarb
D ,
Hett
T ,
Hofer
LE ,
Ibáñez
LF ,
Hustedt
EJ ,
Kucher
S ,
Kuprov
I ,
Lovett
JE ,
Meyer
A ,
Ruthstein
S ,
Saxena
S ,
Stoll
S ,
Timmel
CR ,
Valentin
MD ,
Mchaourab
HS ,
Prisner
TF ,
Bode
BE ,
Bordignon
E ,
Bennati
M ,
Jeschke
G ,
Benchmark Test and Guidelines for DEER/PELDOR Experiments on Nitroxide-Labeled Biomolecules
J Am Chem Soc.
2021 Nov
3;
143
(43).
17875-17890
- PMID: 34664948 [PubMed].
Hustedt
EJ ,
Stein
RA ,
Mchaourab
HS ,
Protein functional dynamics from the rigorous global analysis of DEER data: Conditions, components, and conformations
J Gen Physiol.
2021 Nov
1;
53
(11).
e201711954
- PMID: 34529007 [PubMed].
- PMCID: PMC8449309.
Del Alamo
D ,
Jagessar
KL ,
Meiler
J ,
Mchaourab
HS ,
Methodology for rigorous modeling of protein conformational changes by Rosetta using DEER distance restraints
PLoS Comput Biol.
2021 Jun
16;
7
(6).
e1009107
- PMID: 34133419 [PubMed].
- PMCID: PMC8238229.
Aguilar
J ,
Cheng
MH ,
Font
J ,
Schwartz
AC ,
Ledwitch
K ,
Duran
A ,
Mabry
SJ ,
Belovich
AN ,
Zhu
Y ,
Carter
AM ,
Shi
L ,
Kurian
MA ,
Fenollar-Ferrer
C ,
Meiler
J ,
Ryan
RM ,
Mchaourab
HS ,
Bahar
,
Matthies
HJg ,
Galli
A ,
Psychomotor impairments and therapeutic implications revealed by a mutation associated with infantile Parkinsonism-Dystonia
Elife.
2021 May
18;
10
(e68039).
- PMID: 34002696 [PubMed].
- PMCID: PMC8131106.
Del Alamo
D ,
Govaerts
C ,
Mchaourab
HS ,
AlphaFold2 predicts the inward-facing conformation of the multidrug transporter LmrP
Proteins.
2021 May
11;
89
(9).
1226–1228
- PMID: 33973689 [PubMed].
- PMCID: PMC8522053 .
Claxton
DP ,
Jagessar
KL ,
Mchaourab
HS ,
Principles of Alternating Access in Multidrug and Toxin Extrusion (MATE) Transporters
J Mol Biol .
2021 Aug
6;
433
(16).
166959
- PMID: 33774036 [PubMed].
- PMCID: PMC8292195.
Castellano
S ,
Claxton
DP ,
Ficici
E ,
Kusakizako
T ,
Stix
R ,
Zhou
W ,
Nureki
O ,
Mchaourab
HS ,
Faraldo-Gómez
JD ,
Conserved binding site in the N-lobe of prokaryotic MATE transporters suggests a role for Na + in ion-coupled drug efflux
J Biol Chem.
2021 Jan
5;
296
(100262).
- PMID: 33837745 [PubMed].
- PMCID: PMC7949106.
2020
Han
B ,
Porta
JC ,
Hanks
JL ,
Peskova
Y ,
Binshtein
E ,
Dryden
K ,
Claxton
DP ,
Mchaourab
HS ,
Karakas
E ,
Ohi
MD ,
Kenworthy
AK ,
Structure and assembly of CAV1 8S complexes revealed by single particle electron microscopy
Sci Adv.
2020 Dec
2;
6
(49).
eabc6185
- PMID: 33268374 [PubMed].
Yardeni
EH ,
Mishra
S ,
Stein
RA ,
Bibi
E ,
Mchaourab
HS ,
The Multidrug Transporter MdfA Deviates from the Canonical Model of Alternating Access of MFS Transporters
J Mol Biol.
2020 Sep
18;
20
(432).
5665-5680
- PMID: 32860775 [PubMed].
- PMCID: PMC7541688.
Rahman
S ,
Mchaourab
HS ,
ATP-dependent interactions of a cargo protein with the transmembrane domain of a polypeptide processing and secretion ABC transporter
J Biol Chem.
2020 Aug
20;
- PMID: 32820049 [PubMed].
Debruycker
V ,
Hutchin
A ,
Masureel
M ,
Masureel
E ,
Martens
C ,
Legrand
P ,
Stein
RA ,
Mchaourab
HS ,
Faraldo-Gómez
JD ,
Remaut
H ,
Govaerts
C ,
An embedded lipid in the multidrug transporter LmrP suggests a mechanism for polyspecificity
Nat Struct Mol Biol.
2020 Sep
27;
(9).
829-835
- PMID: 32719456 [PubMed].
Chavan
S ,
Cheng
C ,
Jiang
T ,
Mathews
I ,
Stein
RA ,
Koehl
A ,
Mchaourab
HS ,
Tajkhorshid
E ,
Maduke
M ,
A CLC-ec1 mutant reveals global conformational change and suggests a unifying mechanism for the CLC Cl -/H + transport cycle
Elife.
2020 Apr
20;
(9).
e53479
- PMID: 32310757 [PubMed].
- PMCID: PMC7253180.
Yang
Z ,
Stein
RA ,
Ngendahimana
T ,
Pink
M ,
Rajca
S ,
Jeschke
G ,
Eaton
S ,
Mchaourab
HS ,
Rajca
A ,
Supramolecular Approach to Electron Paramagnetic Resonance Distance Measurement of Spin-Labeled Proteins
J Phys Chem B.
2020 Apr
23;
16
(124).
3291–3299
- PMID: 32227839 [PubMed].
Jagessar
L ,
Claxton
P ,
Stein
RA ,
Mchaourab
HS ,
Sequence and structural determinants of ligand-dependent alternating access of a MATE transporter
Proceedings of the National Academy of Sciences.
2020 Feb
19;
- PMID: 32075917 [PubMed].
Del Alamo
D ,
Tessemer
H ,
Stein
RA ,
Felix
B ,
Mchaourab
HS ,
Meiler
J ,
Rapid Simulation of Unprocessed DEER Decay Data for Protein Fold Prediction
Biophysical Journal.
2020 Jan
21;
2
(118).
366-375
- PMID: 31892409 [PubMed].
- PMCID: PMC6976798.
2019
Yardeni
E ,
Bahrenberg
T ,
Stein
RA ,
Mishra
S ,
Zomot
E ,
Graham
B ,
Tuck
K ,
Huber
T ,
Bibi
E ,
Mchaourab
HS ,
Goldfarb
D ,
Probing the solution structure of the E. coli multidrug transporter MdfA using DEER distance measurements with nitroxide and Gd(III) spin labels
Scientific Reports .
2019 Aug
29;
9
(1).
12528
- PMID: 31467343 [PubMed].
- PMCID: PMC6715713 .
Dastvan
R ,
Mishra
S ,
Peskova
YB ,
Robert
N ,
Mchaourab
HS ,
Mechanism of allosteric modulation of P-glycoprotein by transport substrates and inhibitors
Science.
2019 May
17;
364
(6441).
689-692
- PMID: 31097669 [PubMed].
Campbell
NG ,
Shekar
A ,
Aguilar
JI ,
Peng
D ,
Navratna
V ,
Yang
D ,
Morley
AN ,
Duran
AM ,
Galli
G ,
O'Grady
B ,
Ramachandran
R ,
Sutcliffe
JS ,
Sitte
HH ,
Erreger
K ,
Meiler
J ,
Stockner
T ,
Bellan
LM ,
Matthies
HJG ,
Gouaux
E ,
Mchaourab
HS ,
Galli
A ,
Structural, functional, and behavioral insights of dopamine dysfunction revealed by a deletion in
Proceedings of the National Academy of Sciences of the United States of America.
2019 Feb
12;
116
(9).
3853-3862
- PMID: 30755521 [PubMed].
- PMCID: PMC6397532.
2018
Paz
A ,
Claxton
DP ,
Kumar
JP ,
Kazmier
K ,
Bisignano
P ,
Sharma
S ,
Nolte
SA ,
Liwag
TM ,
Nayak
V ,
Wright
EM ,
Grabe
M ,
Mchaourab
HS ,
Abramson
J ,
Conformational transitions of the sodium-dependent sugar transporter, vSGLT
Proceedings of the National Academy of Sciences of the United States of America.
2018 Mar
05;
115
(12).
E2742-E2751
- PMID: 29507231 [PubMed].
- PMCID: PMC5866573.
Song
X ,
Jensen
MØ ,
Jogini
V ,
Stein
RA ,
Lee
CH ,
Mchaourab
HS ,
Shaw
DE ,
Gouaux
E ,
Mechanism of NMDA receptor channel block by MK-801 and memantine
Nature.
2018 Apr
18;
556
(7702).
515-519
- PMID: 29670280 [PubMed].
- PMCID: PMC5962351.
Claxton
DP ,
Jagessar
KL ,
Steed
PR ,
Stein
RA ,
Mchaourab
HS ,
Sodium and proton coupling in the conformational cycle of a MATE antiporter from
Proceedings of the National Academy of Sciences of the United States of America.
2018 Jun
18;
115
(27).
E6182-E6190
- PMID: 29915043 [PubMed].
- PMCID: PMC6142240.
Mishra
S ,
Chandler
SA ,
Williams
D ,
Claxton
DP ,
Koteiche
HA ,
Stewart
PL ,
Benesch
JLP ,
Mchaourab
HS ,
Engineering of a Polydisperse Small Heat-Shock Protein Reveals Conserved Motifs of Oligomer Plasticity
Structure (London, England : 1993).
2018 Jul
05;
26
(8).
1116-1126.e4
- PMID: 29983375 [PubMed].
Warren
GM ,
Stein
RA ,
Mchaourab
HS ,
Eichman
BF ,
Movement of the RecG Motor Domain upon DNA Binding Is Required for Efficient Fork Reversal
International journal of molecular sciences.
2018 Oct
06;
19
(10).
- PMID: 30301235 [PubMed].
- PMCID: PMC6213257.
Kusakizako
T ,
Claxton
DP ,
Tanaka
Y ,
Maturana
AD ,
Kuroda
T ,
Ishitani
R ,
Mchaourab
HS ,
Nureki
O ,
Structural Basis of H-Dependent Conformational Change in a Bacterial MATE Transporter
Structure (London, England : 1993).
2018 Nov
15;
27
(2).
293-301.e3
- PMID: 30449688 [PubMed].
Wu
SY ,
Zou
P ,
Mishra
S ,
Mchaourab
HS ,
Transgenic zebrafish models reveal distinct molecular mechanisms for cataract-linked αA-crystallin mutants
PloS one.
2018 Nov
26;
13
(11).
e0207540
- PMID: 30475834 [PubMed].
- PMCID: PMC6261105.
2017
Verhalen
B ,
Dastvan
R ,
Thangapandian
S ,
Peskova
Y ,
Koteiche
HA ,
Nakamoto
RK ,
Tajkhorshid
E ,
Mchaourab
HS ,
Energy transduction and alternating access of the mammalian ABC transporter P-glycoprotein
Nature.
2017 Mar
13;
543
(7647).
738-741
- PMID: 28289287 [PubMed].
- PMCID: PMC5558441.
Carra
S ,
Alberti
S ,
Arrigo
PA ,
Benesch
JL ,
Benjamin
IJ ,
Boelens
W ,
Bartelt-Kirbach
B ,
Brundel
BJJM ,
Buchner
J ,
Bukau
B ,
Carver
JA ,
Ecroyd
H ,
Emanuelsson
C ,
Finet
S ,
Golenhofen
N ,
Goloubinoff
P ,
Gusev
N ,
Haslbeck
M ,
Hightower
LE ,
Kampinga
HH ,
Klevit
RE ,
Liberek
K ,
Mchaourab
HS ,
McMenimen
KA ,
Poletti
A ,
Quinlan
R ,
Strelkov
SV ,
Toth
ME ,
Vierling
E ,
Tanguay
RM ,
The growing world of small heat shock proteins: from structure to functions
Cell stress & chaperones.
2017 Mar
31;
22
(4).
601-611
- PMID: 28364346 [PubMed].
- PMCID: PMC5465036.
Collauto
A ,
Mishra
S ,
Litvinov
A ,
Mchaourab
HS ,
Goldfarb
D ,
Direct Spectroscopic Detection of ATP Turnover Reveals Mechanistic Divergence of ABC Exporters
Structure (London, England : 1993).
2017 Jul
14;
25
(8).
1264-1274.e3
- PMID: 28712805 [PubMed].
- PMCID: PMC5600498.
Mishra
S ,
Wu
SY ,
Fuller
AW ,
Wang
Z ,
Rose
KL ,
Schey
KL ,
Mchaourab
HS ,
Loss of αB-crystallin function in zebrafish reveals critical roles in the development of the lens and stress resistance of the heart
The Journal of biological chemistry.
2017 Nov
21;
293
(2).
740-753
- PMID: 29162721 [PubMed].
- PMCID: PMC5767876.
2016
Zhu
S ,
Stein
RA ,
Yoshioka
C ,
Lee
CH ,
Goehring
A ,
Mchaourab
HS ,
Gouaux
E ,
Mechanism of NMDA Receptor Inhibition and Activation.
Cell.
2016 Apr
6;
- PMID: 27062927 [PubMed].
Arrigoni
C ,
Rohaim
A ,
Shaya
D ,
Findeisen
F ,
Stein
RA ,
Nurva
SR ,
Mishra
S ,
Mchaourab
HS ,
Minor
DL ,
Unfolding of a Temperature-Sensitive Domain Controls Voltage-Gated Channel Activation.
Cell.
2016 Feb
25;
164
(5).
922-36
- PMID: 26919429 [PubMed].
- PMCID: PMC4769381.
- NIHMSID: NIHMS757503
Khantwal
CM ,
Abraham
SJ ,
Han
W ,
Jiang
T ,
Chavan
TS ,
Cheng
RC ,
Elvington
SM ,
Liu
CW ,
Mathews
II ,
Stein
RA ,
Mchaourab
HS ,
Tajkhorshid
E ,
Maduke
M ,
Revealing an outward-facing open conformational state in a CLC Cl(-)/H(+) exchange transporter.
eLife.
2016
;
5
- PMID: 26799336 [PubMed].
- PMCID: PMC4769167.
Dastvan
R ,
Fischer
AW ,
Mishra
S ,
Meiler
J ,
Mchaourab
HS ,
Protonation-dependent conformational dynamics of the multidrug transporter EmrE.
Proceedings of the National Academy of Sciences of the United States of America.
2016 Feb
2;
113
(5).
1220-5
- PMID: 26787875 [PubMed].
- PMCID: PMC4747756.
Krug
U ,
Alexander
NS ,
Stein
RA ,
Keim
A ,
Mchaourab
HS ,
Sträter
N ,
Meiler
J ,
Characterization of the Domain Orientations of E. coli 5′-Nucleotidase by Fitting an Ensemble of Co…
Structure (London, England : 1993).
2016 Jan
5;
24
(1).
43-56
- PMID: 26724996 [PubMed].
- PMCID: PMC4706771.
- NIHMSID: NIHMS744303
Martens
C ,
Stein
RA ,
Masureel
M ,
Roth
A ,
Mishra
S ,
Dawaliby
R ,
Konijnenberg
A ,
Sobott
F ,
Govaerts
C ,
Mchaourab
HS ,
Lipids modulate the conformational dynamics of a secondary multidrug transporter
Nature structural & molecular biology.
2016 Jul
11;
23
(8).
744-51
- PMID: 27399258 [PubMed].
- PMCID: PMC5248563.
Wu
SY ,
Zou
P ,
Fuller
AW ,
Mishra
S ,
Wang
Z ,
Schey
KL ,
Mchaourab
HS ,
Expression of Cataract-linked γ-Crystallin Variants in Zebrafish Reveals a Proteostasis Network That Senses Protein Stability
The Journal of biological chemistry.
2016 Oct
21;
291
(49).
25387-25397
- PMID: 27770023 [PubMed].
- PMCID: PMC5207241.
Kazmier
K ,
Claxton
DP ,
Mchaourab
HS ,
Alternating access mechanisms of LeuT-fold transporters: trailblazing towards the promised energy landscapes
Current opinion in structural biology.
2016 Dec
30;
45
100-108
- PMID: 28040635 [PubMed].
- PMCID: PMC5491374.
2015
Koteiche
HA ,
Claxton
DP ,
Mishra
S ,
Stein
RA ,
McDonald
ET ,
Mchaourab
HS ,
Species-Specific Structural and Functional Divergence of α-Crystallins: Zebrafish αBa- and Rodent …
Biochemistry.
2015 Sep
29;
54
(38).
5949-58
- PMID: 26378715 [PubMed].
Zou
P ,
Wu
SY ,
Koteiche
HA ,
Mishra
S ,
Levic
DS ,
Knapik
E ,
Chen
W ,
Mchaourab
HS ,
A conserved role of αA-crystallin in the development of the zebrafish embryonic lens.
Experimental eye research.
2015 Sep
;
138
104-13
- PMID: 26149094 [PubMed].
- PMCID: PMC4638411.
- NIHMSID: NIHMS708963
Claxton
DP ,
Kazmier
K ,
Mishra
S ,
Mchaourab
HS ,
Navigating Membrane Protein Structure, Dynamics, and Energy Landscapes Using Spin Labeling and EPR S…
Methods in enzymology.
2015
;
564
349-87
- PMID: 26477257 [PubMed].
Mori
T ,
Mchaourab
H ,
Johnson
CH ,
Circadian Clocks: Unexpected Biochemical Cogs.
Current biology : CB.
2015 Oct
5;
25
(19).
R842-4
- PMID: 26439342 [PubMed].
- PMCID: PMC4697453.
- NIHMSID: NIHMS744952
Schmandt
N ,
Velisetty
P ,
Chalamalasetti
SV ,
Stein
RA ,
Bonner
R ,
Talley
L ,
Parker
MD ,
Mchaourab
HS ,
Yee
VC ,
Lodowski
DT ,
Chakrapani
S ,
A chimeric prokaryotic pentameric ligand-gated channel reveals distinct pathways of activation.
The Journal of general physiology.
2015 Oct
;
146
(4).
323-40
- PMID: 26415570 [PubMed].
- PMCID: PMC4586589.
Kaur
H ,
Lakatos
A ,
Spadaccini
R ,
Vogel
R ,
Hoffmann
C ,
Becker-Baldus
J ,
Ouari
O ,
Tordo
P ,
Mchaourab
H ,
Glaubitz
C ,
The ABC exporter MsbA probed by solid state NMR – challenges and opportunities.
Biological chemistry.
2015 Sep
;
396
(9-10).
1135-49
- PMID: 25849794 [PubMed].
Meyer
V ,
Swanson
MA ,
Clouston
LJ ,
Boratyński
PJ ,
Stein
RA ,
Mchaourab
HS ,
Rajca
A ,
Eaton
SS ,
Eaton
GR ,
Room-temperature distance measurements of immobilized spin-labeled protein by DEER/PELDOR.
Biophysical journal.
2015 Mar
10;
108
(5).
1213-9
- PMID: 25762332 [PubMed].
- PMCID: PMC4375670.
Anderson
DM ,
Floyd
KA ,
Barnes
S ,
Clark
JM ,
Clark
JI ,
Mchaourab
H ,
Schey
KL ,
A method to prevent protein delocalization in imaging mass spectrometry of non-adherent tissues: app…
Analytical and bioanalytical chemistry.
2015 Mar
;
407
(8).
2311-20
- PMID: 25665708 [PubMed].
- PMCID: PMC4379205.
- NIHMSID: NIHMS662674
2014
Kazmier
K ,
Sharma
S ,
Islam
SM ,
Roux
B ,
Mchaourab
HS ,
Conformational cycle and ion-coupling mechanism of the Na+/hydantoin transporter Mhp1.
Proceedings of the National Academy of Sciences of the United States of America.
2014 Oct
14;
111
(41).
14752-7
- PMID: 25267652 [PubMed].
- PMCID: PMC4205665.
Yu
Z ,
Quine
RW ,
Rinard
GA ,
Tseitlin
M ,
Elajaili
H ,
Kathirvelu
V ,
Clouston
LJ ,
Boratyński
PJ ,
Rajca
A ,
Stein
R ,
Mchaourab
H ,
Eaton
SS ,
Eaton
GR ,
Rapid-scan EPR of immobilized nitroxides.
Journal of magnetic resonance (San Diego, Calif. : 1997).
2014 Oct
;
247
67-71
- PMID: 25240151 [PubMed].
- PMCID: PMC4247172.
- NIHMSID: NIHMS626711
Dürr
KL ,
Chen
L ,
Stein
RA ,
De Zorzi
R ,
Folea
IM ,
Walz
T ,
Mchaourab
HS ,
Gouaux
E ,
Structure and dynamics of AMPA receptor GluA2 in resting, pre-open, and desensitized states.
Cell.
2014 Aug
14;
158
(4).
778-92
- PMID: 25109876 [PubMed].
- PMCID: PMC4263325.
- NIHMSID: NIHMS620755
Mishra
S ,
Verhalen
B ,
Stein
RA ,
Wen
PC ,
Tajkhorshid
E ,
Mchaourab
HS ,
Conformational dynamics of the nucleotide binding domains and the power stroke of a heterodimeric AB…
eLife.
2014
;
3
e02740
- PMID: 24837547 [PubMed].
- PMCID: PMC4046567.
Kazmier
K ,
Sharma
S ,
Quick
M ,
Islam
SM ,
Roux
B ,
Weinstein
H ,
Javitch
JA ,
McHaourab
HS ,
Conformational dynamics of ligand-dependent alternating access in LeuT.
Nature structural & molecular biology.
2014 May
;
21
(5).
472-9
- PMID: 24747939 [PubMed].
- PMCID: PMC4050370.
- NIHMSID: NIHMS580423
Masureel
M ,
Martens
C ,
Stein
RA ,
Mishra
S ,
Ruysschaert
JM ,
Mchaourab
HS ,
Govaerts
C ,
Protonation drives the conformational switch in the multidrug transporter LmrP.
Nature chemical biology.
2014 Feb
;
10
(2).
149-55
- PMID: 24316739 [PubMed].
- PMCID: PMC4749020.
- NIHMSID: NIHMS756889
2013
Hamilton
PJ ,
Campbell
NG ,
Sharma
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Proceedings of the National Academy of Sciences of the United States of America.
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FEBS letters.
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Biochemistry.
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PLoS biology.
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Proceedings of the National Academy of Sciences of the United States of America.
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2006
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