Publications
(last updated April 1, 2024)
Refereed Journal Publications
2024
66. Shuang Chang, Halina Krzyzanowska, and Audrey K. Bowden (in press), “Label-Free Optical Technologies to Enhance Noninvasive Endoscopic Imaging of Early-Stage Cancers,” Annual Reviews 17 (2024)
65. Kimani C. Toussaint, Audrey K. Bowden, Abdoulaye Ndao, Moussa N’Gom, and Thomas A. Searles, “Introduction to the special feature: amplify Black voices in optics and photonics,” Opt. Express 32, 9213-9218 (2024)
2023
64. Chang, S., Bermoy, M.E., Chang, S., Scarpato, K., Luckenbaugh, A., Kolouri, S., Bowden, A.K., “Enhancing the image quality of blur light cystoscopy through green-hue correction and fogginess removal,” Scientific Reports, 2023, DOI 10.1038/s41598-023-48882-z
63. Cosgriff-Hernandez, E.M., Aguado, B.A., Akpa, B. et al. Equitable hiring strategies towards a diversified faculty. Nat. Biomed. Eng 7, 961–968 (2023).
62. Chang, S., Giannico, G.A., Haugen, E., Jardaneh, A., Baba, J., Mahadevan-Jansen, A., Chang, S.S., Bowden, A.K., “Multiparameter interferometric polarization-enhanced imaging differentiates carcinoma in situ from inflammation of the bladder: an ex vivo study,” J. Biomed. Opt. 28(10) 102907 (2023)
61. Malone, J., Hussain, I., Bowden, A.K., “SmartOCT: Smartphone-integrated optical coherence tomography,” Biomedical Optics Express (2023)
60. Cronin, A., Tkaczyk, E.R., Hussain, I., Bowden, A.K., Saknite, I., “Effect of camera distance and angle on color of diverse skin tone-based standards in smartphone photos,” Journal of Biophotonics (2023)
59. Bowden, A.K., Fongwen, N. & Jimoh, A.K. Bioengineering for global health. Nat Rev Bioeng 1, 10–12 (2023). https://doi.org/10.1038/s44222-022-00009-1
58. Malone, J.D., Aggarwal, N., Waller, L., and Bowden, A.K., “DiffuserSpec: spectroscopy with Scotch tape,” Opt. Lett. 48, 323-326 (2023)
2022
57. Chang, S., Murff, C., Leng, T., Groth, S.L., and Bowden, A.K., “Depth-resolved extraction of optical attenuation for glaucoma assessment in clinical settings: a pilot study,” Biomed. Opt. Express 13, 4326-4337 (2022)
56. Hussain, I., Locke, A., Kight, E., Malone, J.D., Haselton, F., Bowden, A.K., “A multi-channel smartphone-based spectroscopic system for high-throughput biosensing in low-resource settings,” Analyst, 2022, DOI: 10.1039/D2AN00597B.
55. Chang, S., Handwerker, J., Giannico, G.A., Chang, S.S., Bowden, A.K., “Birefringent tissue-mimicking phantom for polarization-sensitive optical coherence tomography imaging,” J. Biomed. Opt. 27(7), 074711 (2022), doi: 10.1117/1.JBO.27.7.074711.
2021
54. Zhou, Y., Eimen, R. L., Seibel, E.J. and Bowden, A.K., “Cost-Efficient Video Synthesis and Evaluation for Development of Virtual 3D Endoscopy,” IEEE Journal of Translational Engineering in Health and Medicine, 9, 1-11 (2021). DOI: 10.1109/JTEHM.2021.3132193.
55. Kight, E.C., Hussain, I., Bowden, A.K. and F.R. Haselton, “Recurrence monitoring for ovarian cancer using a cell phone-integrated paper device to measure the ovarian cancer biomarker HE4/CRE ratio in urine,” Scientific Reports, 11:21945 (2021). DOI: 10.1038/s41598-021-01544-4.
54. Bowden, A.K. and Cullen R.B., “Anti-Black racism in academia and what you can do about it,” Nat. Rev. Mater. 6, 760-761 (2021). DOI: 10.1038/s41578-021-00361-5
53. Tsow, F., Kumar, A., Hosseini, S.M.H. and Bowden, A.K., “A low-cost, wearable, do-it-yourself functional near-infrared spectroscopy (DIY-fNIRS) headband,” HardwareX, 10(10), ee00204 (2021). DOI: 10.1016/j.ohx.2021.e00204
52. Hussain, I. and Bowden, A.K., “Smartphone-based optical spectroscopic platforms for biomedical applications: a review [invited],” Biomed. Opt. Exp., 12(4), 1974-1998 (2021). DOI: 10.1364/BOE.416753.
51. Kight, E., Hussain, I. and Bowden, A.K., “Low-cost, volume-controlled dipstick urinalysis for home testing,” JOVE (2021). DOI: 10.3791/61406
2020
50. Bowden, A.K., Durr, N.J., Erickson, D., Ozcan, A., Ramanujam, N. and P. Vacas Jacques, “Optical Technologies for Improving Healthcare in Low-Resource Settings: Introduction to the feature issue,” Biomed. Opt. Exp., 11(3), 3091-3094 (2020). DOI: 10.1364/BOE.397698
2019
49. Shuang C., Bowden, A.K., “Review of methods and applications of attenuation coefficient measurements with optical coherence tomography,” J. Biomed. Opt. 24(9), 090901 (2019), doi: 10.1117/1.JBO.24.9.090901.
48. Tsow, F., Bowden, A., 2019. Wearable Functional Near-Infrared (Fnir) Technology and Its Applications in Naturalistic Conditions. American Journal of Biomedical Science & Research, 5(1), pp.33–38.
2018
47. Dwork, N., Smith, G.T., Leng, T., Pauly, J.M. and Bowden, A.K., “Automatically determining the confocal parameters from OCT B-scans for quantification of the attenuation coefficients,” Accepted to IEEE Transactions on Medical Imaging (2018), doi: 10.1109/TMI.2018.2861570. PMID: 30072317
46. Smith, G.T., Li, L., Zhu, Y. and Bowden, A.K., “Low-power, low-cost urinalysis system with integrated dipstick evaluation and microscopic analysis,” Lab Chip 18, 2111-2123, (2018).
2017
45. Lurie, K. L., Angst, R., Zlatev, D.V., Liao, J.C. and A.K. Ellerbee Bowden, “3D reconstruction of cystoscopy videos for comprehensive bladder records,” Biomed. Opt. Exp. 8(4), 2106-2123, (2017).
44. Shanjani, Y., Kang, Y., Zarnescu, L., Ellerbee Bowden, A.K., Koh, J., Elmer Ker, D. and Y. Yang, “Endothelial pattern formation in hybrid constructs of additive manufactured porous rigid scaffolds and cell-laden hydrogels for orthopedic applications.” Journal of the Mechanical Behavior of Biomedical Materials 65, p356-372 (2017). http://dx.doi.org/10.1016/j.jmbbm.2016.08.037
2016
43. Lurie, K.L., Angst, R., Seibel, E.J., Liao, J.C. and Ellerbee Bowden, A.K., “Registration of free-hand OCT daughter endoscopy to 3D organ reconstruction,” Biomed. Opt. Exp. 7(12), 4995-5009, (2016).
42. Guay-Lord, R., Attendu, X., Lurie, K. L., Majeau, L., Godbout, N., Ellerbee Bowden, A.K., Strupler, M., and Caroline Boudoux, “Combined optical coherence tomography and hyper-spectral imaging using a double-clad fiber coupler,” J. Biomed Opt. 21(11), 116008, (2016).
41. Marvdashti, T., Duan, L., Aasi, S.Z., Tang, J.Y. and A.K. Ellerbee Bowden, “Classification of basal cell carcinoma in human skin using machine learning and quantitative features captured by polarization-sensitive optical coherence tomography,” Biomed. Opt. Express 7(9), 3721-3735 (2016).
40. Lee, H., Raphael, P., Patrick, Xia, A. Kim, J., Grillet, N., Applegate, B., Bowden, A.K., and J. Oghalai, “Two-dimensional cochlear micromechanics measured in vivo demonstrate radial tuning within the mouse organ of Corti” J. Neurosci. 36(31) 8160-8173 (2016).
39. Khan, S.A., Cheng, C., Zaidi, Z., Shin, W., Shi, Y., Bowden, A.K. and O. Solgaard, “Metal-Insulator- Metal waveguides for particle trapping and separation,” Lab on a Chip 16, 2302-2308, (2016).
38. Ortega-Quijano, N., Marvdashti, T. and A.K. Ellerbee Bowden, “Enhanced depolarization contrast in polarization-sensitive optical coherence tomography” Optics Letters 41(10), 2350-2353 (2016).
37. Smith, G.T., Dwork, N.D., Khan, S.K., Millett, M., Magar, K., Javanmard, M. and A.K. Ellerbee Bowden, “Robust dipstick urinalysis using a low-cost, micro-volume slipping manifold and mobile phone platform,” Lab on a Chip 16, 2069-2078 (2016). Selected as back cover article.
36. Mousavi, M., Duan, L., Javidi, T. and A.K. Ellerbee Bowden, “Iterative re-weighted approach to high- resolution optical coherence tomography with narrow-band sources,” Opt. Express 24(2), 1781-1793 (2016).
35. Smith, G.T., Lurie, K.L., Zlatev, D.V., Liao, J.C., A.K. Ellerbee Bowden, “Multimodal 3D cancer- mimicking optical phantom,” Biomed. Opt. Exp. 7(2), 648-662 (2016).
34. Khan, S.A. and A.K. Ellerbee Bowden, “Colloidal Quantum Dots for Cost Effective, Miniaturized, and Simple Spectrometers,” Clin. Chem. 62(4), (2016). doi: 10.1373/clinchem.2015.247999
2015
33. Federici, A., Gutierrez da Costa, H.S., Ogien, J., Ellerbee, A.K. and A. Dubois, “Wide-field, full-field optical coherence microscopy for high-axial-resolution phase and amplitude imaging,” App Opt. 54(27), 8212-8220 (2015).
32. Zarnescu, L., Leung, M. C., Abeyta, M., Sudkamp, H., Baer, T., Behr, B., and A.K. Ellerbee. “Label-free characterization of vitrification-induced morphology changes in single-cell embryos with full-field optical coherence tomography,” J. Biomed. Opt. 20 (9), 096004 (2015).
31. Lee, G. C., Smith, G. T., Agrawal, M., Leng, Theodore, L., and A.K. Ellerbee, “Fabrication of Healthy and Disease-mimicking Retinal Phantoms with Tapered Foveal Pits for Optical Coherence Tomography,” J. Biomed. Opt. 20 (8), 085004 (2015).
30. Smith, G.T., Dwork, N., O’Conner, D., Sikora, U., Lurie, K.L., Pauly, J.M. and A.K. Ellerbee, “Automated, Depth-resolved Estimation of the Attenuation Coefficient From Optical Coherence Tomography Data,” IEEE Trans. Med. Imag. 34(12), 2592-2602 (2015).
29. Duan, L., Marvdashti, T. and A.K. Ellerbee, “Polarization-sensitive interleaved optical coherence tomography,” Opt. Express 23(10) 13693-13703 (2015)
28. Lurie, K.L., Gurjarpadhye, A.A., Seibel, E.J. and A.K. Ellerbee, “Rapid scanning catherscope for expanded forward-view volumetric imaging with optical coherence tomography,” Optics Lett 40(13) 3165-3168 (2015).
27. Khan, S.A., Chang, C., Jan, C., Fan, S. Ellerbee, A.K., and O. Solgaard, “Optical separation of heterogeneous size distributions of microparticles on silicon nitride strip waveguides,” Opt. Express 23(7), 8855-8866 (2015).
26. Lee, H., Raphael, P. D., Park, J., Ellerbee, A. K., Applegate, B. E. and J. S. Oghalai “Noninvasive in vivo imaging reveals differences between tectorial membrane and basilar membrane traveling waves in the mouse cochlea,” PNAS, 112 (10) 3128–3133 (2015).
25. Hennek, J.W., Nemiroski.A., Subramaniam.A.B., Bwambok.D.K., Yang.D., Harburg.D.V., Tricard.S., Ellerbee, A.K., and G.M. Whitesides, “Using Magnetic Levitation for Non-Destructive Quality Control of Plastic Parts,” Adv. Mater. 27(9), 1587-1592 (2015).
2014
24. Duan, L., Lee, H., Lee, G., Agrawal, M., Smith, G.T. and A.K. Ellerbee, “Single-shot speckle noise reduction by interleaved optical coherence tomography,” J. Biomed. Opt, 19(12), 120501 (2014).
23. Duan, L., Marvdashti, T., Lee, A., Tang, J. and A.K. Ellerbee, “Automated identification of basal cell carcinoma by polarization-sensitive optical coherence tomography,” Biomed Opt. Exp. 5(10), 3717- 3729 (2014).
22. Marvdashti, T., Duan, L., Lurie, K.L., Smith, G.T. and A.K. Ellerbee, “Quantitative Measurements of Strain and Birefringence with Common-Path Polarization-Sensitive Optical Coherence Tomography,” Opt. Lett. 39(19), 5507-5510 (2014).
21. Lee, H., Marvdashti, T., Duan, L., Kahn, S. and A.K. Ellerbee, “Scalable multiplexing for parallel imaging with interleaved optical coherence tomography,” Biomed. Opt. Exp. 5(9), 3192-3203 (2014).
20. Subramaniam, A.B., Yang, D., Yu, D., Nemiorski, A., Tricard, S, Ellerbee, A.K., Soh, S., and Whitesides, G.M. “Non-contact Orientation of Objects in Three Dimensional Space Using Magnetic Levitation,” PNAS 111(36), 12980–12985 (2014).
19. Khan, S.A., Smith, G.T., Seo, F. and A.K. Ellerbee, “Label-free and noncontact optical biosensing of glucose with quantum dots,” Biosensors and Bioelectronics, 64, 30-35 (2014).
18. Lurie, K.L., Angst, R., and Ellerbee, A.K., “Automated mosaicing of feature-poor optical coherence tomography volumes with a freehand dual-modality probe,” IEEE Trans. in Biomed. Eng. 61(7), 2141-2153 (2014). Selected as Cover Article.
17. Lurie, K.L., Smith, G.T., Khan, S.A., Liao, J.C., and A.K. Ellerbee, “Three-dimensional, distendable bladder phantom for optical coherence tomography and white light cystoscopy,” J. Biomed. Opt. 19 (3), 036009 (2014). PMID: 24623158
2013
16. Lee, H., Sudkamp, H., Marvdashti, T., and A.K. Ellerbee, “Interleaved Optical Coherence Tomography,” Opt Exp. 21 (22), 26542-26556, (2013).
15. Stan, C.A., Ellerbee, A.K., Guglielmini, L., Stone, H.A., and G.M. Whitesides, “The magnitude of lift forces acting on drops and bubbles in liquids flowing inside microchannels,” Lab Chip 13(3), 365-376 (2013).
2012
14. Gu, R.Y., Lurie, K.L., Pipes, M. and A.K. Ellerbee, “Variable-sized bar targets for characterizing three-dimensional resolution in OCT,” Biomed. Opt. Express 3(9), 2317-2125 (2012).
13. Lurie, K.L, Moritz, T.J. and A.K. Ellerbee, “Design Considerations for Polarization-Sensitive Optical Coherence Tomography,” Biomed. Opt. Express 3(9), 2273-2287 (2012).
12. Ling, W.A. and A.K. Ellerbee, “The effects of reduced bit depth on optical coherence tomography phase data,” Optics Express 20 (14), 15654-15668 (2012).
2011
11. Choi, W., Hashimoto, M., Ellerbee, A.K., Chen, X., Bishop, K.J.M., Garstecki, P., Stone, H.A., and G.M. Whitesides, “Bubbles Navigating through Networks of Microchannels,” Lab Chip. 8 (23), 3970-8 (2011).
10. Stan, C.A., Guglielmini, L., Ellerbee, A.K., Caviezel, D., Stone, H.A., and G.M. Whitesides, “Sheathless Hydrodynamic Positioning of Buoyant Drops and Bubbles inside Microchannels,” Phys. Rev. E 84, 036302 (2011).
9. Ilievski, F., Mirica, K.A., Ellerbee, A.K., and G.M. Whitesides, “Templated Three-Dimensional Self- Assembly Using Magnetic Levitation,” Soft Matter 7 (19), 9113-9118 (2011).
8. Mirica, K.A., Ilievski, F., Ellerbee, A.K., Shevkoplyas, S.S., and G.M. Whitesides, “Using Magnetic Levitation for Three Dimensional Self-Assembly,” Adv. Mat. 23 (36), 4134-4140 (2011).
2009
7. Ellerbee, A.K., Phillips, S.T., Siegel, A.C., Mirica, K.A., Martinez, A.W., Striehl, P., Jain, N., Prentiss, M., and G.M. Whitesides, “Quantifying colorimetric assays in paper-based microfluidic devices by measuring the transmission of light through paper,” Anal. Chem. 81 (20), 8447-8452, (2009).
6. Hashimoto, M., Feng, J., York, R.L., Ellerbee, A.K., Morrison, G., Thomas III, S.W., Mahadevan, L., and G.M. Whitesides, “Infochemistry: Encoding information as optical pulses using droplets in a microfluidic device,” J. Am. Chem. Soc. 131 (34), 12420-12429, (2009).
2007
5. Ellerbee, A.K., Creazzo, T.L., and J.A. Izatt, “Investigating nanoscale cellular dynamics with cross- sectional spectral domain phase microscopy,” Opt. Exp. 15 (13), 8115-8124, (2007).
4. McDowell, E. J., Ellerbee, A.K., Choma, M. A., Applegate, B. E., and J. A. Izatt, “Spectral domain phase microscopy for local measurements of cytoskeletal rheology in cells,” J. Biomed. Opt. 12 (4), 044008, (2007).
3. Ellerbee, A.K., and J. A. Izatt, “Phase retrieval in low-coherence interference microscopy,” Opt. Lett., 32 (4), 388-390, (2007).
2006
2. Choma, M.A., Ellerbee, A.K., Yazdanfar, S., and J.A. Izatt, “Doppler flow imaging of cytoplasmic flow using spectral domain phase microscopy,” J. Biomed. Opt. 11, 024014, (2006).
2005
1. Choma, M.A., Ellerbee, A.K., Yang, C., Creazzo, T.L., and J.A. Izatt, “Spectral-domain phase microscopy,” Opt. Lett. 30, 1162-1164, (2005).
Refereed Conference / Symposia Proceedings
2017
54. Smith, G.T., Dwork, N.D., Khan, S.A., Millet, M., Magar, K., Javanmard, M. and Bowden, A.K., “Reducing user error in dipstick urinalysis with a low-cost slipping manifold and mobile phone platform,” SPIE Photonics West, Bios Conference, Oral Presentation, (2017).
53. Gutierrez da Costa, H.S., Silva, L., Bellon, O.R.P., Bowden, A.K. and Czovny, R.K., “3D matching techniques using OCT fingerprint point clouds,” Proc. SPIE 100680O, SPIE Photonics West, Bios Conference, Oral Presentation, (2017). doi: 10.1117/12.2253107
2016
52. Gutierrez da Costa, H.S., Bellon, O.R.P., Silva, L., and A.K. Bowden, “Towards biometric identification using 3D epidermal and dermal fingerprints,” IEEE International Conference on Image Processing (ICIP), Poster Presentation, Phoenix (2016).
51. Ortega-Quijano, N., Marvdashti, T. and A.K. Ellerbee Bowden, “Enhanced depolarization contrast in polarization-sensitive optical coherence tomography,” Poster Presentation, OSA Biomed Topical Meeting for Optical Tomography and Spectroscopy, Fort Lauderdale (2016).
50. Federici, A., Gutierrez Da Costa, H.S., Ogien, J., Ellerbee, A.K., and A. Dubois, “A wide-field full-field optical coherence microscope,” Poster Presentation, Focus on Microscopy, Taipei, Taiwan (2016).
49. Dwork, N., Smith, G., Pauly, J., and A.E. Bowden, “Automated Estimation of OCT Confocal Parameters,” CLEO: Applications and Technology, San Jose (2016)
48. Marvdashti, T., Duan, L., Tang, J., Aasi, S. and A.K. Bowden, “Machine-learning detection of basal cell carcinoma in human skin using polarization–sensitive optical coherence tomography,” Oral Presentation, OSA Biomed Topical Meeting for Optical Tomography and Spectroscopy, Fort Lauderdale (2016).
47. Federici, A., Gutierrez Da Costa, H.S., Ellerbee, A.K., and A. Dubois, “Imagerie tomographique de phase et d’amplitude par OCT plein champ,” Journées Imagerie Optique Non Conventionnelle, Paris, France (2016).
46. Guay Lord, R., Lurie,L., Attendu, X., Mageau, L., Godbout, N., Ellerbee Bowden, A.K., Strupler, M., and C. Boudoux, “Combined optical coherence tomography and hyper-spectral imaging using a double clad fiber coupler,”Proc. SPIE 97010X, Poster Presentation, San Francisco, CA (2016).
2015
45. Marvdashti, T.M., Duan, L., Ransohoff, K., Aasi, S., Tang, J. and A.K. Ellerbee, “Towards Automated Detection of Basal Cell Carcinoma from Polarization Sensitive Optical Coherence Tomography Images of Human Skin,” Oral Presentation, San Jose, CLEO: Applications and Technology, STh3K.3 (2015)
44. Mousavi, M., Duan, L., Javadi, T. and A.K. Ellerbee, “Alternative techniques for high-resolution spectral estimation of spectrally encoded endoscopy,” Proc. SPIE 96000G, Oral Presentation, San Diego (2015).
43. Lurie, K.L., Zlatev, D.V., Angst, R., Gao, J., Li, S., Mach, K.E., Ellerbee, A.K. and J.C. Liao, “Virtual 3D Bladder Reconstruction from White Light Cystoscopy,” Oral Presentation, American Urological Association Annual Meeting, New Orleans (2015).
42. Smith, G.T., Lurie, K.L., Agrawal, M., Liao, J.C. and A.K. Ellerbee, 3D bladder phantom for evaluation of cystoscopic technologies,” Poster Presentation, Engineering and Urology Society Annual Meeting, New Orleans (2015).
41. Lurie, K.L., Gurjarpadhye, A.A., Seibel, E.S. and A.K. Ellerbee, “Scanning fiber technology for rapid volumetric optical coherence tomography cystoscopy,” Poster Presentation, Engineering and Urology Society Annual Meeting, New Orleans (2015). Best Paper Award
40. Smith, G.T., Lurie, K.L. and A.K. Ellerbee, “Characterization of new materials and methods for fabricating a 3D, disease-mimicking bladder tissue phantom,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco (2015).
39. Lurie, K.L., Mistree, B.F.T. and A.K. Ellerbee, “Perspectives of the optical coherence tomography community on code and data sharing,” SPIE Photonics West: BiOS Conference, Poster Presentation, Proc. SPIE 9312 (2015).
38. Lee, H., Raphael, P.D., Park, J., Ellerbee, A.K., Oghalai, J.S. and B.E. Applegate, “Volumetric optical coherence tomography: vibrometry for in vivo measurement of traveling waves in the mouse inner ear with picometer sensitivity,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco (2015).
37. Lee, G.C.F., Smith, G.T., Agrawal, M. and A.K. Ellerbee, “Fabrication of anatomically tapered foveal pits for retinal phantoms for optical coherence tomography,” SPIE Photonics West: BiOS Conference, Oral Presentation, Proc. SPIE 9325 (2015)
36. Duan, L.D., Lee, H., Lee, G.C.F., Marvdashti, T., Smith, G.T. and A.K. Ellerbee, “Single-shot speckle noise reduction using interleaved optical coherence tomography,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco (2015).
35. Ellerbee, A.K., Lee, H., Raphael, P.D., Oghalai, J.S. and B.E. Applegate, “In vivo vibratory response of the organ of Corti in the apex of the mouse cochlea,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco (2015).
2014
34. Zarnescu, L., Abeyta, M., Baer, T.M., Behr B., and A.K. Ellerbee, “Assessing the effects of vitrification on embryo viability using label-free imaging,” Oral Presentation, Fertility and Sterility 102(3), e62 (2014).
33. Lee, H., Raphael, P.D., Ellerbee, A.K., Applegate, B.E. and J.S. Oghalai, “Swept source optical coherence tomography for in vivo imaging and vibrometry in the apex of the mouse cochlea,” Mechanics of Hearing Conference, Poster Presentation, Cape Sounio, Greece (2014).
32. Duan, L., Marvdashti, T.M., Lee, A., Tang, J.Y. and A.K. Ellerbee, “Automated classification of basal cell carcinoma in mouse skin by polarization sensitive optical coherence tomography,” Oral Presentation, San Jose, CLEO: Applications and Technology, ATh1O.3 (2014).
31. Marvdashti, T.M., Duan, L., Lurie, K.L., and A.K. Ellerbee, “Quantitative birefringence measurements using a single-arm polarization-sensitive OCT system,” Poster Presentation, Miami, FL, OSA Biomedical Optics BT3A.65 (2014).
30. Khan, S.A., Chang, C.M., Jan, C., Scouros, E., Ellerbee, A.K. and O. Solgaard, “Optical propulsion and sorting of microparticles on silicon nitride strip waveguides,” Poster Presentation, International Conference on Optical MEMS and Nanophotonics (OMN) 185-186 (2014).
29. Lurie, K.L., Smith, G.T., Khan, S.A., Liao, J.C. and A.K. Ellerbee, “Multilayered disease-mimicking bladder phantom with realistic surface topology for optical coherence tomography,” Oral Presentation, San Francisco, Proc. SPIE 89450E1-8 (2014).
28. Lee, H., Marvdashti, T., Welsh, T., Duan, L. and A.K. Ellerbee, “Spectrally multiplexed imaging for swept-source optical coherence tomography using tunable virtually imaged phase arrays,” Oral Presentation, San Francisco (2014).
27. Khan, S.A., Smith, G.T. and A.K. Ellerbee, “Label-free assay for the detection of glucose mediated by the effects of narrowband absorption on quantum dot photoluminescence,” Oral Presentation, San Francisco, Proc. SPIE 89330A1-7 (2014).
26. Zarnescu, L., Sudkamp, H., Behr B., Baer, T.M. and A.K. Ellerbee, “Assessment of imaging parameters correlated with the effects of freezing on embryo development,” Oral Presentation, San Francisco, Proc. SPIE 89530F1-9 (2014).
25. Mousavi, M., Lurie, K.L., Land, J., Tara Javidi, and A.K. Ellerbee, “Telemedicine + OCT: toward design of optimized algorithms for high-quality compressed images,” Oral Presentation, Proc. SPIE 893608-1-10 (2014).
24. Lurie, K.L. and A.K. Ellerbee, “Volumetric mosaicing for optical coherence tomography for large area bladder wall visualization,” Oral Presentation, San Francisco, Proc. SPIE 89261P1-9, (2014).
23. Gutierrez da Costa, H.S., Silva, L. and A.K. Ellerbee, “Evaluation of Fingerprint Deformation using Optical Coherence Tomography,” Oral Presentation, San Francisco, Proc. SPIE 89460I1-8 (2014).
22. Lee, H., Raphael, P.D., Ellerbee, A.K., Applegate, B.E. and J.S. Oghalai, “Swept source optical coherence tomography for imaging and vibrometry inside the mouse cochlea in vivo,” Association for Research in Otolaryngology, Poster Presentation, San Diego, CA (2014).
2013
21. Zarnescu, L., Sudkamp, H., Behr B., Baer, T., and A.K. Ellerbee, “Non-contact, label-free 3D imaging of developing embryos,” Poster Presentation, Fertility and Sterility 100(3), S515 (2013).
20. Lee, H., Sudkamp, H., Marvdashti, T. and A.K. Ellerbee, “Enhanced Speed in Swept-Source OCT with a Multi-band Demultiplexer,” Engineering Conferences International, Poster Presentation, Lake Tahoe, CA (2013).
19. Lurie, K.L. and A.K. Ellerbee, “Co-registration of OCT volumes for 3D bladder mosaicing,” Biomedical Engineering Society, Poster Presentation, Seattle, WA (2013).
18. Gu, R.Y., Lurie, K.L. and A.K. Ellerbee, “Air Force chart-like phantom for measuring axial and lateral resolution in optical coherence tomography,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 85830B1-8 (2013).
17. Marvdashti, T., Lee, H. and A.K. Ellerbee, “High-resolution spectrometer: solution to the axial resolution and imaging depth tradeoff of SD-OCT,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 85710V1-9 (2013).
16. Lee, H.Y. and A.K. Ellerbee, “Single-shot interpixel shifting for optical coherence tomography by oblique incidence spectroscopy,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 85720I1-10 (2013).
2012
15. Su, N., Lurie, K.L. and A.K. Ellerbee, “Measuring Performance of Different Compression Algorithms for Fourier Domain OCT Data,” Biomedical Engineering Society, Poster Presentation, Atlanta, GA (2012).
14. Ling, W.A. and A.K. Ellerbee, “Effects of Reduced Bit-Depth on Phase Data in Common-Path Optical Coherence Tomography,“ OSA Biomed Conference, Poster Presentation, Miami, FL (2012).
13. Lurie, K.L. and A.K. Ellerbee, “New Design Options for Polarization-Sensitive Optical Coherence Tomography,” OSA Biomed Conference, Poster Presentation, Miami, FL (2012).
12. Copeland, C.N. and A.K. Ellerbee, “Analysis of the effects of different resampling techniques for optical coherence tomography,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 8227, 82270W (2012).
11. Copeland, C.N. and A.K. Ellerbee, “The effects of different gold standards on the accuracy of optical coherence tomography,” SPIE Photonics West: BiOS Conference, Oral Presentation, San Francisco, CA, Proc. SPIE 8225, 822511 (2012).
2011
10. Choi, W., Hashimoto, M., Ellerbee, A.K., Chen, X., Bishop, K.J.M., Garstecki, P., Stone, H.A., G.M. Whitesides, “Flows of Bubbles in Microfluidic Networks,” International Mechanical Engineering Congress and Exposition, (2011).
2010
9. Mirica, K. A., Ilievski, F., Ellerbee, A. K., and Whitesides, G. M., “Using magnetic levitation for meso-scale self-assembly,” 239th ACS National Meeting & Exposition, San Francisco, CA (2010).
2008
8. Ellerbee, A.K., Hendargo, H., Motomora, A.R., and J.A. Izatt, “Extension of Spectral Domain Phase Microscopy to Three-Dimensional Nanoscale Displacement Mapping in Cardiomyocytes,” SPIE Photonics West: BiOS Conference, Oral Presentation, Proc. SPIE 6861, 686108, (2008).
2007
7. Ellerbee, A.K., Choma, M.A., Creazzo, T.L., and J.A. Izatt, “Examining Cardiomyocyte Development with Spectral Domain Phase Microscopy,” SPIE Photonics West: BiOS Conference, Oral Presentation, Proc. SPIE 6441, 644109 (2007).
2006
6. Ellerbee, A.K., “High Speed Multidimensional Spectral Domain Phase Microscopy,” Gordon Conference on Lasers in Medicine, Poster Presentation, (2006).
5. Ellerbee, A.K., “High Speed Spectral Domain Phase Microscopy for Quantitative Cell Surface and Cytoplasmic Flow Measurements,” OSA Topical Meeting on Biomedical Optics, Oral Presentation, (2006).
4. Sarunic, M., Weinberg, S. Ellerbee, A., Applegate, B., and J. A. Izatt. “Full-field swept-source phase microscopy,” SPIE Photonics West: BiOS Conference, Oral Presentation, Proc. SPIE 6079, 60791X, (2006).
2005
3. Ellerbee, A.K., Choma, M.A., McDowell, E.J., Yang, C., Creazzo, A.L., and J.A. Izatt, “Characterizing Cellular Contractility and Cytoplasmic Flow Using Spectral Domain Phase Microscopy,” SPIE Photonics West: BiOS Conference, Oral Presentation, Proc. SPIE 5690, 403, (2005).
2. McDowell, E.J., Choma, M.A., Ellerbee, A.K., and J.A. Izatt, “Spectral domain phase microscopy: a new tool for measuring cellular dynamics and cytoplasmic flow,” SPIE Photonics West: BiOS Conference, Poster Presentation, Proc. SPIE 5701, 182, (2005).
2004
- Choma, M.A., Ellerbee, A.K., Yang, C., and J.A. Izatt, “Spectral domain phase microscopy,” OSA Topical Meeting on Biomedical Optics, Oral Presentation, (2004).
Non-refereed Conference / Symposia Proceedings
2018
25. Tsow, F., Shao, D., Liu, C., Tao, N.J. and A.K. Bowden, “Video-based physiologicsl parameters tracking,” Gordon Research Conference on Lasers in Medicine and Biology, Lewiston, ME (2018).
24. Dwork, N., Smith, G.T., Pauly, J.M., Leng, T. and A.K. Bowden, “Automatically Quantifying the Attenuation Coefficient Using Optical Coherence Tomography,” Biomedical Computation at Stanford, Stanford, CA (2018).
2016
23. Leung, M.C., Liba, O., Abeyta, M., Behr, B. and A.K. Bowden, “3D Embryo Cell Lineage Tracking from Single Cell to Blastocyst using Full-Field Optical Coherence Tomography,” Gordon Research Conference on Lasers in Medicine and Biology, West Dover, VT (2016)
2015
22. Leung, M.C., Zarnescu, L, Abeyta, M., Behr, B. and A.K. Ellerbee, “A Label-Free Method of Observing Embryo Morphology Changes Induced by Vitrification Using Full-Field Optical Coherence Tomography,” CBIS Annual Symposium, Stanford University (2015).
21. Lee, G., Milanfar, L., Suresh, R., Andrews, J. and A.K. Bowden, “Developing a Smartphone-based Microscopy Technique for Diagnosing Schistosomiasis in Low Resource Settings,” Poster Presentation, Stanford Undergraduate Research Symposium, (2015)
2014
20. Ellerbee, A.K., “Optical Coherence Tomography: New Technology and Applications,” Frontiers in Bioengineering, Invited Participant, Poster presentation, Urbana-Champaign, IL (2014).
19. Lurie, K.L., Angst, R. and A.K. Ellerbee, “Volumetric mosaicing of Optical Coherence Tomography for Bladder Visualization,” Max Planck Center for Visual Computing and Communication Symposium, Stanford, CA (2014).
2013
18. Zarnescu, L., Sudkamp, H., Baer, T., and A.K. Ellerbee, “Full-field Optical Coherence Tomography of Early Embryonic Development,” Stanford University Photonics Retreat, Poster Presentation, Pacific Grove, CA (2013).
17. Zarnescu, L., Sudkamp, H., Baer, T., and A.K. Ellerbee, “Full-field Optical Coherence Tomography of Early Embryonic Development,” Center for Biomedical Imaging at Stanford Annual Symposium, Stanford, CA (2013).
16. Marvdashti, T., Duan, L. and A.K. Ellerbee, “Combined Polarization Sensitive OCT (PS-OCT) and Raman Spectroscopy (RS) for Label-free Assessment of Molecular and Structural Abnormalities for Point-of-Care Skin Cancer Diagnostics” Stanford Photonics Research Center Annual Symposium, Poster Presentation, Stanford, CA (2013).
2012
15. Lurie, K.L., Moritz, T.J. and A.K. Ellerbee, “Considerations for Polarization-sensitive optical coherence tomography design,” Gordon Research Conference on Lasers in Medicine and Biology, Holderness, NH, (2012).
14. Lee, H. and A.K. Ellerbee, “Extend Imaging Depth in Spectral-domain Optical Coherence Tomography by Oblique Incidence,” Gordon Research Conference on Lasers in Medicine and Biology, Holderness, NH, (2012).
13. Lee, H. and A.K. Ellerbee, “Extend Imaging Depth in Spectral-domain Optical Coherence Tomography by Oblique Incidence,” Center for Biomedical Imaging at Stanford Annual Symposium, (2012).
12. Marvdashti, T. and A.K. Ellerbee, “High-Resolution Spectrometer for Spectral-Domain Optical Coherence Tomography,” Stanford University Photonics Research Annual Retreat, (2012).
2011
11. Lee, H.Y. and A.K. Ellerbee, “A Spectral Encoding-Based Approach to Real-time Volumetric Imaging with Optical Coherence Tomography,” Center for Biomedical Imaging at Stanford Annual Symposium, (2011).
10. Lurie, K.L. and A.K. Ellerbee, “Towards Polarization-Sensitive OCT for Non-Invasive Blood Glucose Monitoring,” International Graduate Summer School in Biophotonics, Ven, Sweden (2011).
9. Cohen, N., Gebru, T., Lee, H.Y., Lurie, K.L., Marvdashti, T., and A.K. Ellerbee, “Optical Coherence Tomography: Paradoxical Problem Solving,” Bio-X Annual Symposium, Stanford University (2011).
8. Lurie, K.L. and A.K. Ellerbee, “Towards Polarization-Sensitive OCT for Non-Invasive Blood Glucose Monitoring,” Stanford University Photonics Research Annual Retreat, (2011).
7. Cohen, N., Gebru, T., Lee, H.Y., Lurie, K.L., Marvdashti, T., and A.K. Ellerbee, “Optical Coherence Tomography: Advancing Technology, Impacting Disease,” Bio-X Annual Symposium, Stanford University (2011).
2009
6. Ellerbee, A.K., Phillips, S.T., Siegel, A.C., Mirica, K.A., Martinez, A.W., Striehl, P., Jain, N., Prentiss, M., and G.M. Whitesides, “Quantifying colorimetric assays in paper-based microfluidic devices by measuring the transmission of light through paper,” Conference of Ford Fellows, Oral Presentation, Irvine, CA (2009).
5. Mirica, K. A., Ellerbee, A. K., Ilievski, F., and Whitesides, G. M., “Programmable Self-Assembly of Complex Shapes in Three Dimensions,” Gordon Research Conference on Supramolecular Chemistry and Self-Assembly, Waterville, ME (2009).
2005
4. Ellerbee, A.K., “Spectral domain phase microscopy: a new tool for investigating nanoscale and cellular dynamics,” National Society of Black Engineers Technical Paper Symposium, Oral Presentation, (2005).
2004
3. Choma, M. A., Ellerbee, A.K., Yang, C., and J.A. Izatt, “Spectral domain phase microscopy,” Gordon Conference on Lasers in Medicine, Poster Presentation, (2004).
2. Ellerbee, A.K., Choma, M.A., and J.A. Izatt, “Exploring heart cell dynamics using spectral domain phase microscopy,” Gordon Conference on Lasers in Medicine, Poster Presentation, (2004).
1997
1. Ellerbee, A.K., Perrotti, L.I., and Landsman, R.E., “Temperature and Fish Immunology: Assumptions, Truths, and New Data,” Mid-Atlantic Koi Club Annual Meeting, Oral Presentation, (1997).