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Lab News

Can and Yichen (Henry)’s paper is accepted by the journal Nature Communications!

Jul. 31, 2024—Congrats to Can and Henry! Their paper, “VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing.”, has just been accepted for publication in Nature Communications.

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Yunfei’s paper is accepted by the journal Genome Biology!

Jul. 30, 2024—Congrats to Yunfei and all coauthors! Our paper, “Benchmarking clustering, alignment, and integration methods for spatial transcriptomics.”, has just been accepted for publication in Genome Biology.

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Congratulations to Yunfei (Oliver) for receiving the 2024 VADD Travel Funds~

Jul. 3, 2024—Congratulations to Yunfei (Oliver) for receiving the 2024 VADD Travel Funds~

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Congratulations to Can for receiving the 2024 Graduate School Travel Grant~

Apr. 14, 2024—Congratulations to Can for receiving the 2024 Graduate School Travel Grant~

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Congratulations to Yunfei (Oliver) for receiving the 2024 Graduate School Travel Grant~

Mar. 20, 2024—Congratulations to Yunfei (Oliver) for receiving the 2024 Graduate School Travel Grant~

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Can passed her qualifying exam today~

Mar. 19, 2024—Congratulations to Can, she passed her qualifying exam today~

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Congratulations to Weiman for receiving the 2024 Graduate School Travel Grant~

Mar. 18, 2024—Congratulations to Weiman for receiving the 2024 Graduate School Travel Grant~  

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Weiman and Can’ paper is accepted by the conference RECOMB-Seq!

Mar. 12, 2024—Congrats to Weiman & Can! Our paper, “CNVeil enables accurate and robust tumor subclone identification and copy number estimation from single cell sequencing data ” has been accepted for presentation at RECOMB-seq at MIT, April 27-28 2024.

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Yunfei (Oliver)’ paper is accepted by the conference RECOMB-Seq!

Mar. 12, 2024—Congrats to Yunfei (Oliver) Hu! Our paper, “MaskGraphene: Advancing joint embedding, clustering, and batch correction for spatial transcriptomics using graph-based self-supervised learning” has been accepted for presentation at RECOMB-seq at MIT, April 27-28 2024.

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Weiman and Can’s poster is accepted by RECOMB!

Mar. 4, 2024—Congrats to Weiman and Can! Their paper, “CNVeil enables accurate and robust tumor subclone identification and copy number estimation from single cell sequencing data.” has been accepted by RECOMB for a poster presentation. 

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Yichen (Henry) and Can’s paper is accepted by the journal Nature Communications!

Mar. 4, 2024—Congrats to Henry and Can! Their paper, “Tradeoffs in alignment and assembly-based methods for structural variant detection with long-read sequencing data”, has just been accepted for publication in Nature Communications.

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Our Research Topic in Frontiers in Genetics is accepted and online!

Nov. 29, 2023—Our Research Topic “Towards a More Complete and Accurate Personal Genome Sequence: Methods and Use Cases” in Frontier in Genetics” is accepted and online! We welcome all forms of submissions: Original Research Articles, Review Articles, Method Articles, Case Reports, Mini Review Articles, Code, Book Reviews, General Commentaries, Perspectives, Hypotheses & Theories. The aim of the...

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We received a supplement award for our NIH grant!

Aug. 2, 2023—Our R35 Maximizing Investigators’ Research Award (MIRA) supplement proposal was funded by the National Institute of General Medical Sciences! Many thanks for the support!

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Our paper ADEPT has just been accepted to the journal iScience!

Apr. 27, 2023—Our paper “ADEPT: autoencoder with differentially expressed genes and imputation for a robust spatial transcriptomics clustering“, has just been accepted to the journal iScience.

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Congratulations to Yunfei (Oliver) for receiving the 2022-2023 Graduate School Travel Grant~

Mar. 20, 2023—Congratulations to Yunfei (Oliver) for receiving the 2022-2023 Graduate School Travel Grant~ He will present his work “ADEPT: autoencoder with differentially expressed genes and imputation for a robust spatial transcriptomics clustering” in Istanbul, Turkey, on April 15th at RECOMB-Seq. https://recomb-seq.github.io/program/

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