Protocols
- Protocols
- Competent Cells Protocol
- hTERT-RPE serum starvation for synchronization
- Immunofluorescence Protocol
- hTERT-RPE serum starvation for synchronization
- Flow Cytometry Manuals
- Fork regression/restoration/footprinting
- SMARCAL1 DNA binding ATPase assays
- PI and BrdU Flow Cytometry Protocols
- Rong’s 293T suspension+mass spec
- Lysis with DNAse for all nuclear proteins including histones
- DNA Combing Protocol
- DNA fiber labeling
- Comet Assay
- Nascent ssDNA IF assay
- 53BP1 foci
- Retro/Lentivirus production
- PEI transfection of 293T cells
- siRNA transfection optimization
- Flag-His purification mammalian cells
- ATRflox cells Cre
- ATR kinase assay
- G2/M checkpoint assay
- Freezing/Thawing cells in Liquid Nitrogen
- RPA-ssDNA pull down
- GST protein purification from bacteria
- Bacterial expression/His purification
- HeLa siRNA/plasmid transfection
- Protein solubility test in E.coli
From Kareem:
Lysis Buffer:
50mM Tris pH 8
150mM NaCl
0.5% NP40
Before use, supplement with 1mM MgCl2 and 1uL/mL Pierce Universal Nuclease for Cell Lysis. Incubate on ice for 30min. Spin.
This nuclease degrades both DNA and RNA. I use it in my IPs to get the chromatin bound HMCES. It is able to free all of the HMCES from the chromatin fraction.
Add protease and phosphatase inhibitors as appropraite.
Will release histones from DNA.