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Publications

2019

Jimenez L, Yu H, McKenzie AJ, Franklin JL, Patton JG, Liu Q, Weaver AM, Quantitative Proteomic Analysis of Small and Large Extracellular Vesicles (EVs) Reveals Enrichment of Adhesion Proteins in Small EVs Journal of proteome research. 2019 Jan 23; 18 (3) 947-959
Paudel BB, Quaranta V, Metabolic plasticity meets gene regulation Proceedings of the National Academy of Sciences of the United States of America. 2019 Feb 08; 116 (9) 3370-3372

2018

Doxie DB, Greenplate AR, Gandelman JS, Diggins KE, Roe CE, Dahlman KB, Sosman JA, Kelley MC, Irish JM, BRAF and MEK inhibitor therapy eliminates Nestin-expressing melanoma cells in human tumors Pigment cell & melanoma research. 2018 Jun 28; 31 (6) 708-719
Sung BH, Weaver AM, Directed migration: Cells navigate by extracellular vesicles The Journal of cell biology. 2018 Jul 05; 217 (8) 2613-2614
Wang J, Zhao Y, Zhou X, Hiebert SW, Liu Q, Shyr Y, Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation BMC genomics. 2018 Aug 23; 19 (1) 633
Lehman JM, Hoeksema MD, Staub J, Qian J, Harris B, Callison JC, Miao J, Shi C, Eisenberg R, Chen H, Chen SC, Massion PP, Somatostatin receptor 2 signaling promotes growth and tumor survival in small-cell lung cancer International journal of cancer. 2018 Oct 09; 144 (5) 1104-1114
Gandelman JS, Byrne MT, Mistry AM, Polikowsky HG, Diggins KE, Chen H, Lee SJ, Arora M, Cutler C, Flowers M, Pidala J, Irish JM, Jagasia MH, Machine learning reveals chronic graft–host disease phenotypes and stratifies survival after stem cell transplant for hematologic malignancies Haematologica. 2018 Sep 20; 104 (1) 189-196
Liu Q, Herring CA, Sheng Q, Ping J, Simmons AJ, Chen B, Banerjee A, Li W, Gu G, Coffey RJ, Shyr Y, Lau KS, Quantitative assessment of cell population diversity in single-cell landscapes PLoS biology. 2018 Oct 22; 16 (10) e2006687
Greenplate AR, McClanahan DD, Oberholtzer BK, Doxie DB, Roe CE, Diggins KE, Leelatian N, Rasmussen ML, Kelley MC, Gama V, Siska PJ, Rathmell JC, Ferrell PB, Johnson DB, Irish JM, Computational Immune Monitoring Reveals Abnormal Double-Negative T Cells Present across Human Tumor Types Cancer immunology research. 2018 Nov 09; 7 (1) 86-99
Iams WT, Beckermann KE, Almodovar K, Hernandez J, Vnencak-Jones C, Lim LP, Raymond CK, Horn L, Lovly CM, Small Cell Lung Cancer Transformation as a Mechanism of Resistance to PD-1 Therapy in KRAS-Mutant Lung Adenocarcinoma: A Report of Two Cases Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer. 2018 Dec 10; 14 (3) e45-e48
Mistry AM, Greenplate AR, Ihrie RA, Irish JM, Beyond the message: advantages of snapshot proteomics with single-cell mass cytometry in solid tumors The FEBS journal. 2018 Dec 13;

Unknown

Wang J, Dai X, Berry LD, Cogan JD, Liu Q, Shyr Y, HACER: an atlas of human active enhancers to interpret regulatory variants Nucleic acids research. Unknown 47 (D1) D106-D112