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Updates to the RMAP short-read mapping software.


Smith ADAndrew D , Chung WY Wen-Yu , Hodges E Emily , Kendall J Jude , Hannon G Greg , Hicks J James , Xuan Z Zhenyu , Zhang MQ Michael Q . Bioinformatics (Oxford, England). 2009 11 1; 25(21). 2841-2


We report on a major new version of the RMAP software for mapping reads from short-read sequencing technology. General improvements to accuracy and space requirements are included, along with novel functionality. Included in the RMAP software package are tools for mapping paired-end reads, mapping using more sophisticated use of quality scores, collecting ambiguous mapping locations and mapping bisulfite-treated reads.