Updates to the RMAP short-read mapping software.
AUTHORS
Smith
ADAndrew D ,
Chung
WY Wen-Yu ,
Hodges
E Emily ,
Kendall
J Jude ,
Hannon
G Greg ,
Hicks
J James ,
Xuan
Z Zhenyu ,
Zhang
MQ Michael Q .
Bioinformatics (Oxford, England). 2009 11 1; 25(21).
2841-2
- PMID: 19736251[PubMed].
- PMCID: PMC2895571.
ABSTRACT
We report on a major new version of the RMAP software for mapping reads from short-read sequencing technology. General improvements to accuracy and space requirements are included, along with novel functionality. Included in the RMAP software package are tools for mapping paired-end reads, mapping using more sophisticated use of quality scores, collecting ambiguous mapping locations and mapping bisulfite-treated reads.